GgaEX0026658 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75690630-75691726:+
Coord C1 exon
chr1:75690630-75690747
Coord A exon
chr1:75690980-75691089
Coord C2 exon
chr1:75691546-75691726
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATCCTTCATGCTTCTTGCAGGAA
3' ss Score
9.56
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAGACAGACAACCATGGCTGCATTTCTAAACTGGTAAAAACCAAGTTATTCCAACTCAAGAGAACTGGATATGAGAACAAGCTCCATGTGGATGCTAAGATTGAAGAGGAGGAAACAG
Seq A exon
GAATTGTGTTGACTGGAACAAGCTTCTCTGAGATCACAACCACCATCAGCAAAATTACCTTTGAGAACTCAGATTCCTACTACAAACCTGGAATCCCCTTCTTTGGGCAG
Seq C2 exon
GTTAAACTTGTGGATGGGTCTGGTTCTCCAATTGCCAATGAAACTGTGAGGATTTCTTTACAAGGAGGCCAGGAAATGAACTACACAACAAATGAAGAGGGCAGAGCACTATTTGCCTTGAACACTTCCACATTGTACTTCAATTCTGTTGGAATTAGAGTGAGTCCTGGGGGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964_MULTIEX2-1/20=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACCATGGCTGCATTTCT
R:
ACAATGTGGAAGTGTTCAAGGCA
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]