MmuEX6006765 @ mm9
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121594912-121596978:+
Coord C1 exon
chr6:121594912-121595026
Coord A exon
chr6:121595170-121595279
Coord C2 exon
chr6:121596817-121596978
Length
110 bp
Sequences
Splice sites
3' ss Seq
AACCTTTTCTTCTGTTTCAGGTG
3' ss Score
12.52
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
CTAGATGGCCGTGGCTGCTTCTCACAGCTAGTGAAAACCAAGTCTTTCCAGCTAAAGAGGCAAGAGTATGAGATGCAGCTTGATGTGAATGCCAAGATCCAAGAAGAAGGAACAG
Seq A exon
GTGTGGAAGAAACCGGTAAAGGGCTCACTAAGATCACAAGAACTATAACAAAACTATCATTTGTGAACGTGGATACACATTTCAGACAAGGAATTCCTTTCGTTGGGCAG
Seq C2 exon
GTGCTCCTGGTGGATGGGAGAGGCACCCCTATTCCATATGAAATGATCTTCATTGGAGCTGATGAAGCAAACCAGAACATAAATACTACCACTGATAAGAATGGCCTGGCACGGTTCTCCATCAACACTGATGACATCATGGGCACGTCCCTAACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.108 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGCTTCTCACAGCTAG
R:
CGTGCCCATGATGTCATCAGT
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: