MmuEX6007277 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128445211-128446771:-
Coord C1 exon
chr6:128446597-128446771
Coord A exon
chr6:128445918-128446146
Coord C2 exon
chr6:128445211-128445337
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCCTCCATACCAGCGT
3' ss Score
7.46
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGGCACCTCAAGCCTTAGCTGTGGCTGCTTCAGGCCCAGGATCCAGCTTCAGAGCAATGGGCGTGCCGATGATGGGGTTGGACTACTCTGATGAAATTAATCAGGTGGTGGAAGTAAGAGAGACAGTGCGGAAGTACTTCCCTGAGACCTGGATCTGGGACCTGGTGCCACTGGA
Seq A exon
CGTATCCGGGGACGGTGAATTGGCGGTAAAGGTCCCCGACACCATCACTGAGTGGAAGGCCAGTGCATTCTGCTTGTCTGGAACCACTGGCCTTGGCCTCTCCTCCACCATCTCCCTTCAAGCCTTCCAGCCCTTCTTCTTGGAGCTCACTCTCCCATACTCTGTGGTGCGAGGGGAAGCCTTTACCCTCAAAGCCACCGTGCTCAATTACATGTCTCACTGCATTCAG
Seq C2 exon
ATCCGAGTGGACCTAGAGATTTCTCCTGATTTCCTGGCAGTCCCAGTGGGGGGCCATGAAAACTCTCATTGCATCTGTGGAAATGAAAGGAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=15.3)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCAGGCCCAGGATCC
R:
CAGCGACTTTGGGGTCACAG
Band lengths:
277-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: