BtaEX6024080 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101247782-101249128:+
Coord C1 exon
chr5:101247782-101247871
Coord A exon
chr5:101248252-101248480
Coord C2 exon
chr5:101249002-101249128
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCCCCTCTCTAGTAT
3' ss Score
9.7
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTCGAGAGAAGACTCTTCAGCCATGAAAGTGAAAGAAACAATCCGGAAGTATTTCCCTGAGACCTGGATCTGGGAGTTGATACCACTCGA
Seq A exon
TATGTGGGGCAAACATGAGTTGGCAATCAAGGTCCCTGACACCATCACGGAGTGGAAGGCCAGTGCCCTCTGCTTGTCTGGAACAGCAGGGCTTGGACTCTCACCCACCATCTCTCTCACAGCCTTCCAGCCCTTCTTCCTGGAACTCACTCTTCCCTATTCTGTGGTTCGAGGAGAAGCCTTCACACTCAAAGCCACTGTGTTCAACTATCTGTCCCATTGCATTCGG
Seq C2 exon
GTGAGCATACAGCTGGAGGCCTCTTCTGCCTTCTTGGCCATCCCAGTAGAGAAGAATGAAGAATCTCAGTGTGTCTGTGGAAACAAGCAGAGAACCGTGTCCTGGGCTGTGACCCCAAAGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'34-37,'34-35,35-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=29.0)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTTCAGCCATGAAAGTGA
R:
TGACTTTGGGGTCACAGCC
Band lengths:
204-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]