RnoEX6015254 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161817503-161819017:-
Coord C1 exon
chr4:161818843-161819017
Coord A exon
chr4:161818221-161818449
Coord C2 exon
chr4:161817503-161817629
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCCTCCACACCAGCTT
3' ss Score
5.42
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
AGCCTCAAGCCTTAGCTATGTCTGCAATCCCAGGAGCCGGCTACAGATCAAGCAACATTAGGACCAGCTCAATGATGATGATGGGCGCATCAGAAGTAGCTCAGGAGGTAGAAGTAAGAGAGACAGTGCGGAAGTACTTCCCGGAAACCTGGATCTGGGACATGGTGCCGCTGGA
Seq A exon
CTTATCCGGTGACGGTGAGTTGCCGGTAAAGGTCCCTGACACCATCACTGAGTGGAAGGCCAGTGCATTCTGCTTGTCTGGAACTACTGGCCTTGGTCTCTCCTCCACCATCTCCCATAAAGTCTTCCAGCCCTTCTTCCTGGAGCTCACTCTCCCCTACTCTGTGGTTCGAGGCGAAGCATTTATCCTCAAAGCTACCGTACTCAACTACATGCCTCACTGCATTCGG
Seq C2 exon
ATCCATGTGAGCCTAGAGATGTCTCCTGATTTCCTGGCAGTCCCTGTGGGGAGCCATGAAGATTCTCATTGCATCTGTGGAAATGAAAGAAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'21-27,'21-26,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=15.3)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAGCTATGTCTGCAATCCC
R:
CAGCGACTTTGGGGTCACAG
Band lengths:
293-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]