MmuEX6007297 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128570810-128575624:-
Coord C1 exon
chr6:128575540-128575624
Coord A exon
chr6:128571966-128572083
Coord C2 exon
chr6:128570810-128570921
Length
118 bp
Sequences
Splice sites
3' ss Seq
GATGCTCCTTTTCCCACCAGGTA
3' ss Score
10.6
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TTTTGCCCAAATTTGAAGTCGAGCTCACTGCACCAGAGACAATAACCATTGCGGACAGTCAATTTCAAATGGTTACATGTGCAAA
Seq A exon
GTACACCTATGGCCAGCCTGTGCAGGGAAAAGCCCAGATAAAAGTGTGCAGAGAGCTCTTCTCCCCGGCACATTGTGAGAGCAATGAGAATGAAATCTGTGAGCAGTTCACTGTGCAG
Seq C2 exon
CTGAAAGATGGCTGTGCTTCTCACATTATCAACACAAAAGTCTTCCAGTTGGACCGCTCTGGATTGTTCATGACCTTGAATGTTAACGAAGTGGTTACAGAATCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'14-13,'14-10,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCAAATTTGAAGTCGAGC
R:
TGTTCCAGATTCTGTAACCACTTCG
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types