RnoEX6015265 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161896914-161901884:-
Coord C1 exon
chr4:161901800-161901884
Coord A exon
chr4:161898027-161898144
Coord C2 exon
chr4:161896914-161897025
Length
118 bp
Sequences
Splice sites
3' ss Seq
AGTGCTCCTTTTCCCACTAGGTA
3' ss Score
10.1
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TATTGCCCAGATTTGAAGTTGAGCTTACTGCTCCAGAGACCATAACTATCGCAGACAATCAGTTTCCAGTGGTTATGTGTGCAAA
Seq A exon
GTACATCTATGGCCAACCTGTGCGTGGAAAAGCCCAGATCAAAGTGTGCAGAGAGCTCTTCTCCCCGGGGTATTGTGAGAGCAACGAGAATGAAATCTGCGAGCAGTTCACTCTGCAG
Seq C2 exon
CTGAAAGATGGCTGTGCTTCTTACATTGTCAATACGAAAGTCTTCCAGCTGTACCGCTCTGGGTTGTTCATGACGTTGAATATCAACGGAGTCATTACAGAATCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCAGATTTGAAGTTGAGCT
R:
TGTTCCAGATTCTGTAATGACTCCG
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]