MmuEX6008395 @ mm9
Exon Skipping
Gene
ENSMUSG00000030385 | 2900092C05Rik
Description
RIKEN cDNA 2900092C05 gene [Source:MGI Symbol;Acc:MGI:1920340]
Coordinates
chr7:13097866-13100846:+
Coord C1 exon
chr7:13097866-13098048
Coord A exon
chr7:13098165-13098257
Coord C2 exon
chr7:13100805-13100846
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTACAAGTTTTCTTTTCAAGGGA
3' ss Score
5.77
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACTGGGCTGTTAGATAAGTAATTCTATCTTGTGTAGGAAAAAGAACTGGTAATGTTAGAGTGATGCACAAGGTTTGGAGTTCTTCTATGTTTTTATTTTGGTTTTTATTGGGATGCCTACTTCATGTCTGCTTGCCTTATGCAGATGAGCTTTATACTGTTGAGAAAACAACAGACTTATCAG
Seq A exon
GGAGTAGACAGTTAGAAACTTCTAAATCTTCTATGGGACAGCCCAGAGGCTTACTTGCAATACTTCGACCAACAGAAGTAATAATCCCAGCAC
Seq C2 exon
CTAGACCAACTGTGAAGCCATCAGAATTCGATACAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030385-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGGTAATGTTAGAGTGATGCA
R:
TCTGATGGCTTCACAGTTGGT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: