RnoEX0001251 @ rn6
Exon Skipping
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66196028-66213327:-
Coord C1 exon
chr1:66213229-66213327
Coord A exon
chr1:66212117-66212212
Coord C2 exon
chr1:66196028-66196111
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTACAAGTTTTCTTTTCAAGGGA
3' ss Score
5.77
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CCTTCAGATGAAGATCTACAACTCTCAGCTCTGCCTGCATCATGCCTGCCTAGGTGCTGCCCTGCTTCCACCTTGATAACAGATTGAATCTCTGAACCT
Seq A exon
GGAGTAGACAGTTAGAAACATCTGAAACTTCTTCTATGGGACAATCCAGAGGCTTCCTTTCAATACTTCGACCAACACAAGTAAAAATCCCAGCAC
Seq C2 exon
AGAAAAGTGATGCACTTAATCCTTCAGAGACCATTCATATGTTCGCAGCAGATCCAAGCCCCAGATCTAATTCTTGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280_MULTIEX1-4/7=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.288 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAACTCTCAGCTCTGCCT
R:
TCATTCCAAGAATTAGATCTGGGGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]