RnoEX0001250 @ rn6
Exon Skipping
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66196028-66216215:-
Coord C1 exon
chr1:66216158-66216215
Coord A exon
chr1:66213229-66213327
Coord C2 exon
chr1:66196028-66196111
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTATTCTTCTACTAACAGCCT
3' ss Score
6.82
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CAAATAACAGACAGGTACAGAAAGCCACAGCTGGACATAGAGCAAAGATCAACAAATG
Seq A exon
CCTTCAGATGAAGATCTACAACTCTCAGCTCTGCCTGCATCATGCCTGCCTAGGTGCTGCCCTGCTTCCACCTTGATAACAGATTGAATCTCTGAACCT
Seq C2 exon
AGAAAAGTGATGCACTTAATCCTTCAGAGACCATTCATATGTTCGCAGCAGATCCAAGCCCCAGATCTAATTCTTGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280_MULTIEX1-3/7=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGACAGGTACAGAAAGCCAC
R:
TCATTCCAAGAATTAGATCTGGGGC
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]