RnoEX0001248 @ rn6
Exon Skipping
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66196028-66233616:-
Coord C1 exon
chr1:66225832-66233616
Coord A exon
chr1:66216307-66216392
Coord C2 exon
chr1:66196028-66196111
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTTACAACCCACTCAACAGGAA
3' ss Score
5.46
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AATGTGGGAGAGGAGATTGCAATTTTGGATGATGGAAGGATTTCCATTTCAATGTTAAATAGTGAAAGTCCCTTCAGAGAAAAACAAATAACTCTGACCTTTCAGACATGAAATGTAGGAGTGGACATGTGCAGTTGGGGATAGAGGGTGGGAGTTCCCAGCTGCATGGTCTTCAACCTGTAAGGACTAAAGAACCTTGGCTTCTGAAGATACCATTTTGCCCTGGCAACCATCCTCCCTTGTGACATCACACAGAGAAAAACTTTATGCAGGTACAGCAGGCAGCAGTCACTTGGGAGGATCTACATGCAGGTGCATCCTCTTGGGGGGAGACTGAAGACTGTTTTTTACCACAAAGAGGAAGGGACTGTGCAAGAGAATTGGGTACCTCTGCAGCTATTCCATCCAAATTATAGAAAGAGATAAAAATGGATATTCACCACCAATTCCATTTTTCTGAGCTATGAAGGATTGAATTGTTTACTTATTAACCCTGTGAA
Seq A exon
GAAGAAAAACGTGTACTAGGATCCTAGCCAACTTCCTGGGACTACTGACATCACGTATCTTAGATCTACTACTGCTTTTTTTCTAG
Seq C2 exon
AGAAAAGTGATGCACTTAATCCTTCAGAGACCATTCATATGTTCGCAGCAGATCCAAGCCCCAGATCTAATTCTTGGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280_MULTIEX1-1/7=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGCAGCTATTCCATCCA
R:
GCTTGGATCTGCTGCGAACAT
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]