MmuEX6009164 @ mm9
Exon Skipping
Gene
ENSMUSG00000040703 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
Coordinates
chr7:26594198-26596770:-
Coord C1 exon
chr7:26596621-26596770
Coord A exon
chr7:26594457-26594617
Coord C2 exon
chr7:26594198-26594377
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTATGCCTCCCAGGAC
3' ss Score
8.73
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTCGCTCTACGGGACCTGGGCATGGGCAAGCGAGAAGGCGAGGAGCTGATCCAGGCGGAGGTGCAGAGTCTGGTGGAGGCTTTCCAGAAGACAGAAG
Seq A exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCCACCTCTAATGTCGTCTGTTCCCTTGTCTTTGGCATCCGTTTGCCCTATGACGATAAAGAGTTCCAGGCTGTGATCCAGGCAGCAAGTGGTACCTTGTTAGGGATCAGCTCTCCATGGGGCCAG
Seq C2 exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCCTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAGGTACAGAAACACCAGGGACGCTTCCAAACCTCAGGTCCTGCACGTGATGTCGTTGACGCCTTCCTGCTAAAGATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040703-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(27.5=96.2)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTCACCCTGCTCGCTCT
R:
CAGGACCTGAGGTTTGGAAGC
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: