RnoEX6001764 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82603015-82605426:-
Coord C1 exon
chr1:82605277-82605426
Coord A exon
chr1:82603274-82603434
Coord C2 exon
chr1:82603015-82603194
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCTATGCCTCACAGGAC
3' ss Score
9.18
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTTTTCTTTGCCAATGGGGAGCGGTGGAAACAGCTGAGGAAATTCACCCTGCTGGCTCTACGGGACCTGGGCATGGGCAAGCGAGAGGGCGAGGAGCTGATCCAGGAGGAGGTGCAGAATCTGGTGAAGGCTTTCCAGCGGACGGAAG
Seq A exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCTACCTCTAATGTTGTCTGTTCCCTCATCTTTGGCATCCGTTTGCCCTATGAAGATAAAGAGTTTCAGGCTGTGATCCAGGCAGCAAGTGGGACCTTGTTGGGGATCAGCTCTCCATGGGGCCAG
Seq C2 exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCTTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAGGTACAGAGACACCAGGGACGCTCCCACACCTCAGGTCCTGCTCGTGACGTCGTCGATGCCTTCCTGCAAAAGATGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743-'2-4,'2-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTTGCCAATGGGGAGCG
R:
CTGCTGGATAGTGAAGGCAGC
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]