GgaEX0008161 @ galGal3
Exon Skipping
Gene
ENSGALG00000005795 | F1NAB8_CHICK
Description
NA
Coordinates
chr6:18672165-18673948:-
Coord C1 exon
chr6:18673799-18673948
Coord A exon
chr6:18672633-18672793
Coord C2 exon
chr6:18672165-18672341
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTTGTTGCTGCAGAGG
3' ss Score
7.55
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGACCTGGAGGCAACTGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCATTTTCTGGTGGAGAGGATCAGGAAGACACACG
Seq A exon
AGGAACCTTTCAACCCTGGGAAGTTCTTAATCCATGCTGTTGCCAACATCATCTGCTCCATTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGAAGAAAATAACAAATACCAGAACAGAATGCAAACACTG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCTTAGATTCTTTGCCTGGGCCTCATAAAACACTAATAAAAAACACTGAAACCGTTGATGACTTCATTAAAGAAATCGTAATAGCACACCAGGAATCCTTCGATGCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
62%=100=25%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCACCCTGCGTGATTTT
R:
TAAAATCTCGAGGGCAGCTGG
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]