MmuEX6033074 @ mm10
Exon Skipping
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44014904-44016885:-
Coord C1 exon
chr19:44016736-44016885
Coord A exon
chr19:44015666-44015826
Coord C2 exon
chr19:44014904-44015080
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCCCCAACCCCCAGCTC
3' ss Score
8.26
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG
Seq A exon
CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG
Seq C2 exon
ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCATGACGCTGAAGA
R:
GATGTAATCCCGAGGGTTGGC
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types