GgaEX0008161 @ galGal4
Exon Skipping
Gene
ENSGALG00000005795 | CYP2H1
Description
cytochrome P450 2H1 precursor [Source:RefSeq peptide;Acc:NP_001001616]
Coordinates
chr6:17133689-17135472:-
Coord C1 exon
chr6:17135323-17135472
Coord A exon
chr6:17134157-17134317
Coord C2 exon
chr6:17133689-17133865
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTTGTTGCTGCAGAGG
3' ss Score
7.55
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGACCTGGAGGCAACTGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCATTTTCTGGTGGAGAGGATCAGGAAGACACACG
Seq A exon
AGGAACCTTTCAACCCTGGGAAGTTCTTAATCCATGCTGTTGCCAACATCATCTGCTCCATTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGAAGAAAATAACAAATACCAGAACAGAATGCAAACACTG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCTTAGATTCTTTGCCTGGGCCTCATAAAACACTAATAAAAAACACTGAAACCGTTGATGACTTCATTAAAGAAATCGTAATAGCACACCAGGAATCCTTCGATGCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCACCCTGCGTGATTTT
R:
TAAAATCTCGAGGGCAGCTGG
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]