DreEX6074623 @ danRer10
Exon Skipping
Gene
ENSDARG00000068493 | si:zfos-411a11.2
Description
si:zfos-411a11.2 [Source:ZFIN;Acc:ZDB-GENE-131119-33]
Coordinates
chr15:90891-92215:-
Coord C1 exon
chr15:92066-92215
Coord A exon
chr15:91794-91954
Coord C2 exon
chr15:90891-91067
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATAAGAGTTTTCTCCTTCAGCCA
3' ss Score
4.51
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCTGATCATCAGCAATGGTGAACGCTGGCGTCAACTGAGGCGGTTCACGCTCACCACACTGAGGGATTTTGGAATGGGACGCAAACGAATGGAGCAGTGGATTCAAGAAGAGAGCAGATACTTGCTCAAGAGTTTTGAAGAAACCAAAT
Seq A exon
CCAAACCAGTTGATCCATTATTCTTCATGAGCCGGGCTGTGTCCAACGTCATCTGCTCCCTGGTGTTTGGGCAGCGCTTTGATTATGAAGACAAAAACTTCTTGCAGTTGCTCCAGATCATCTCTAACCTCATGCGATTTGCAAGCAGCCCTTGGGGACAG
Seq C2 exon
CTCTACAACATCTTCCCTAAAGTCATGGAGATCTTACCAGGTAGACATCATACCATGTTTGGAGAGATTGATGATCTCAAATCCTCCATAATGACAATTATCAAGGAGCATGAGGAGAATTTGGATCCCAGTGACCCAAAGGACTTTATTGACTGCTTTCTTATCAGGCTCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068493-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACGCTCACCACACTGAG
R:
AAGTCCTTTGGGTCACTGGGA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]