BtaEX6100225 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20896409-20898020:-
Coord C1 exon
chr26:20897871-20898020
Coord A exon
chr26:20897092-20897252
Coord C2 exon
chr26:20896409-20896585
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGTTCACACCAGCTC
3' ss Score
6.97
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACTCATTTTCAGCAATGGAGACACGTGGAAGCAAATGCGGCGCTTCTCCCTTATGACCCTAAGGAACTTTGGGATGGGGAAGAGGAGCCTTGAGGAGAGGATCCAAGAGGAGGCCCAGTTTCTGGTGGAGGAGTTCAGGAAATCAGAGG
Seq A exon
CTCAGCCCTTTAACCCTGCTGTCACCCTGTCCTGTGCTACCTGCAACATCATCTGCTCCATCCTCTTCAACGAACGTTTCCACTACCAAGATAAGACCCTTCACTCCCTGCTGGATTTGTTAAATGAAAATTTTAATCGAATAAGCTCTCTCTGGAACCAG
Seq C2 exon
ATTTACAATCTATGGCCAAAACTCATAAAGCCTCTCCCTGGAGAGCACAGAGCATTTTCAAAAAGGCTTAAGGATGTTCACTACTTTGTTCTGGAAAAAGTGAAGGAGCATCAAAAGTCCCTGAATCATAATAACCCTCGAGACTACATTGACTGTTTCCTCAGCAGGATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939-'7-8,'7-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGAAGAGGAGCCTTGA
R:
TCCTGCTGAGGAAACAGTCAA
Band lengths:
246-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]