MmuEX6009185 @ mm10
Exon Skipping
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:26759341-26763519:+
Coord C1 exon
chr7:26759341-26759490
Coord A exon
chr7:26762244-26762404
Coord C2 exon
chr7:26763343-26763519
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTTGCCTCCTCATCCTCCAGGAG
3' ss Score
11.19
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGTGATCTTTTCCAGTGGGGAACGTTGGAAAACCCTTCGGCGATTCTCTCTGGCCACCATGAGAGACTTTGGGATGGGAAAGCGGAGTGTGGAGGAGCGGATAAAGGAAGAGGCCCAATGTTTGGTGGAGGAACTGAAGAAATACAAGG
Seq A exon
GAGCCCCTCTGAACCCCACCTTCTACTTCCAGTGCATCGTAGCAAATATCATCTGCTCCATTGTCTTTGGAGAGCGCTTTGACTACAAAGACCACCAATTCCTGCATCTGCTAAATCTGATCTACCAGACATTTTCCCTCATGAGCTCATTGTCCAGCCAG
Seq C2 exon
GTGTTTGAGCTCTTCTCTGCCATCCTGAAGTACTTTCCTGGTGCCCACAGACAAATCTCCAAAAACCTGCAGGAAATCCTTGACTACATTGGCCATAGTGTGGAGAAGCACAGGGCCACCTTGGACCCCAGTGCTCCACGAGACTTCATTGATACCTACCTTCTGCGCATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGATGGGAAAGCGGAG
R:
TCCATGCGCAGAAGGTAGGTA
Band lengths:
256-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types