BtaEX6082512 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003871 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
Coordinates
chr18:50572105-50575366:-
Coord C1 exon
chr18:50575217-50575366
Coord A exon
chr18:50573735-50573895
Coord C2 exon
chr18:50572105-50572281
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACCCACTCCTTTCCCTCTAGGAG
3' ss Score
10.86
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTGTTATCTTTGCCAATGGGGAACGTTGGAAGGCCCTTCGGCGATTCTCTCTGGCCACCATGAGGGACTTCGGGATGGGAAAGCGGAGCGTGGAGGAGCGGATTCAGGACGAGGCTCAGTGTCTGGTGGAGGAGCTTCGGAAATCCCAGG
Seq A exon
GAGCCCTCCAGGATCCCGTCTTCTACTTCCACTCCATCACCGCCAACATCATCTGCTCCATTGTCTTTGGAAAACGCTTTGACTACAGAGATCCTGAGTTCCTGAGGCTGCTGGAGTTGTTATTCCAATCTTTCGTGCTCATCAGCTCCCTGTCCAGCCAG
Seq C2 exon
CTGTTCGAGCTCTACTCCAGCTTCTTGAAGTACTTTCCTGGCTCACACAGGCAAATCTACAAAAACCTGCAGGAAATCAACGTCTTCATTGGCCGCAGTGTGGAGCAGCACCGTGAGACCCTCGACCCCAACGCCCCCCGGGATTTCATTGACTGCTACCTGCTCCGCATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003871-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.0=100)
A:
PF0006717=p450=FE(13.7=100)
C2:
PF0006717=p450=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGACTTCGGGATGGGAAA
R:
CAGTCAATGAAATCCCGGGGG
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]