GgaEX1000838 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:2263447-2264480:-
Coord C1 exon
chr14:2264331-2264480
Coord A exon
chr14:2264078-2264235
Coord C2 exon
chr14:2263447-2263614
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCGATTTGCGCCATTTCCAGGTG
3' ss Score
7.95
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GTGTGTTCTTCTCTTCCCAAGAGCTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
Seq A exon
GTGGGCCATTCCGACTTCGGCTTTTGAATGCGGCCCCCACCAACATCACCTTTGCCATGCTCTTTGGGAGAAGGTTTGACTACGGAGACCCAACGTTTGTCACTCTGCTACGACTCATCGATGAAGTTATGCTCCTTCTTGGCTCCCCATTCCTGCAC
Seq C2 exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(30.1=100)
A:
PF0006717=p450=FE(20.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATGCGGGATCTGGGCATG
R:
ACCAGCGCATCAATGTAGCTC
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]