HsaEX6006791 @ hg19
Exon Skipping
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:20243]
Coordinates
chr7:1024586-1026433:+
Coord C1 exon
chr7:1024586-1024735
Coord A exon
chr7:1024802-1024959
Coord C2 exon
chr7:1026260-1026433
Length
158 bp
Sequences
Splice sites
3' ss Seq
GAGGCCCGTCTCCCTCGCAGGCC
3' ss Score
7.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCATCTTCTTCTCATCTGGGGCGCGCTGGAGGGCTGCCCGCCAGTTCACGGTGCGTGCCCTGCACAGCCTGGGCGTGGGCCGGGAGCCGGTGGCTGACAAGATTCTGCAGGAGCTGAAATGCCTCTCTGGGCAGCTGGATGGCTACAGAG
Seq A exon
GCCGGCCCTTCCCGCTGGCCCTACTGGGCTGGGCTCCCTCCAATATCACCTTCGCGCTCCTCTTCGGCCGCCGATTTGACTACCGGGACCCCGTGTTTGTGTCCCTGCTGGGTCTCATCGATGAGGTCATGGTCCTCTTGGGGTCCCCTGGCCTGCAG
Seq C2 exon
CTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCCTGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-'2-5,'2-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTCTTCTCATCTGGGGC
R:
GTCCTCAGAATGGCACGGAC
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)