BtaEX6111343 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42307709-42309633:-
Coord C1 exon
chr25:42309484-42309633
Coord A exon
chr25:42309259-42309416
Coord C2 exon
chr25:42307709-42307882
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAGCCGCTCTCCACCCCCAGGCC
3' ss Score
8.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGTCTTCTTCTCCTCAGGCCCACGCTGGCGGGCCGCCCGCCAGCTCACCGTACGTGCCCTCCACGGCCTGGGTGTGGGGAGGGCGCCCGTGGCCAACAAGGTCTTGCAGGAGCTGAGGTGCCTCACGGCGCAGCTGGACAGCTACGAAG
Seq A exon
GCCGGCCCTTCCCGCTGGCCCTGCTCCGCTGGGCTCCCTCCAACATCACCTTCACGCTCCTCTTCGGTCAGCGGTTCGACTACCGGGATCCTGTGTTCCTGTCCCTGCTGGGCCTCGTTGATGAGGTCATGGTCCTCCTGGGGAAGCCGAGTGTGCAG
Seq C2 exon
CTCTTCAACCTCTACCCGCGGCTCGGGGCCCTCCTCCAGCTGCACCGGCCGGTCCTGCGCAAGATCGAGGAGGTGCGGGCCATCCTGAGGGCCCTCCTGGAGGCGAGGCGGCACCGCACACCCCCGCGAGGGCCACAGCAGAGCTACCTGGACGCCCTGATCCAGCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'5-4,'5-2,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCTCCTCAGGCCCAC
R:
CAGGAGGGCCCTCAGGATG
Band lengths:
246-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]