MmuEX6022057 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139354240-139355727:+
Coord C1 exon
chr5:139354240-139354389
Coord A exon
chr5:139354460-139354617
Coord C2 exon
chr5:139355554-139355727
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCCCTGACCTACAGGCC
3' ss Score
9.64
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCATTTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGTGTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCTATGGAG
Seq A exon
GCCAGCCCCTCCCCCTGGCGCTGCTGGGTTGGGCACCCTGCAACATCACCTTCACACTTCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGCTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGGTCACCTGGCATACAG
Seq C2 exon
CTATTCAACACGTTCCCCCGGCTGGGGGCCTTCCTGCGGTTGCACAGGCCGGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTGAGAACCCTGCTGGAAACGCGGAGACCACCCTTGCCAACGGGCGGTCCCGCGCAGAGTTATGTAGAAGCTCTGCTTCAGCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-'1-13,'1-3,6-13=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTTCTGGAGCTCGCTGG
R:
TTTCCAGCAGGGTTCTCAGGA
Band lengths:
245-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types