GgaEX6012101 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2262059-2262925:+
Coord C1 exon
chr14:2262059-2262208
Coord A exon
chr14:2262282-2262439
Coord C2 exon
chr14:2262752-2262925
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCCTCCCATTGCAGGGG
3' ss Score
11.66
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
Seq A exon
GGGAACCTTTCAGCCTCAGGTCCTTCAGCATTGCTCCAATCAACATCACCTTCCTCATGCTCTTTGGGGACAGGTTTGACTATAAGGATCCAACATTTCTCACTCTCCTAAGACTCATAGATGAAGTTATGGTTCTTCTGGGATCTCCGTACTTGAAT
Seq C2 exon
TATTTCAATTTCTACCCATTCCTTGGATTTCTTTTCAAAACCCACAAGATTTTGCTTAAGAAAATAGAAGATGTGCGTGTCATTATAAGGCAATACATGAAGGCGAGCAGGGAAGATATCAATGAGAACAGTGTAAGGAGCTACACTGATGCCCTGGTATTCAAGCAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'6-3,'6-2,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGCGATCTGTGGAGGAC
R:
TATCTTCCCTGCTCGCCTTCA
Band lengths:
255-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]