MmuEX6009204 @ mm9
Exon Skipping
Gene
ENSMUSG00000078787 | Cyp2t4
Description
cytochrome P450, family 2, subfamily t, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2686296]
Coordinates
chr7:27941176-27942413:+
Coord C1 exon
chr7:27941176-27941325
Coord A exon
chr7:27941535-27941695
Coord C2 exon
chr7:27942237-27942413
Length
161 bp
Sequences
Splice sites
3' ss Seq
GAGCTGCTCTCACCCCCCAGGAG
3' ss Score
8.88
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCATAGTGTTTTCTAACGGGCCGCGTTGGCACTCGCTTCGCAACTTTGCACTTGGAGTGCTGAGGGAGCTTGGCGTGGGTAGGAGTACCATTGAGGATCGCATCCTGGAGGAGGCAGCATGTGTGCTGGATGAATTTCAAGCTACCATGG
Seq A exon
GAGCTCCATTTGACCCCCAGCAGCTACTGGATAGTGCTGTATCCAATGTCATTTGTACTGTGGTTTTCGGAAAGCGCTATGACTATGGGGACCCAGAGTTCCGGAGGCTCCTAAACCTCTTCAGTGACAATTTCTGTATCATGAGTTCCCGATGGGCTGAG
Seq C2 exon
ATATATAATATGTTCCCATCCTTCATGGACTGGATCCCTGGGCCCCACAACCGAATATTTAAAAACTTCCAAGAGCTCCGACTCTTCATCTCTGAGCAAATTCAGTGGCACTGGCAGTCACGACAGACTGGGGAACCCCGTGACTTCATTGATTGTTTCCTCGACCAAATGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078787-'3-5,'3-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGTTTTCTAACGGGCCGC
R:
TGCTCAGAGATGAAGAGTCGGA
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: