DreEX6015440 @ danRer10
Exon Skipping
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12669854-12672665:+
Coord C1 exon
chr3:12669854-12670003
Coord A exon
chr3:12670086-12670246
Coord C2 exon
chr3:12672486-12672665
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTACTCTTGTGCAGGAA
3' ss Score
9.14
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCATTGCGTTTTCCAATGGTGAAAACTGGAGAGAAATGAGACGCTTTGCTCTGTCCACCCTACGAGACTTTGGAATGGGCAGAAAGAGAAGCGAAGAGCTGATCATTGAAGAGATTAAATATGTAAAGGAGGAATTTGAGAAGTTTGGAG
Seq A exon
GAAACCCATTTGAAACAAAACTGCCCTTAGCCTTGGCCATTTCGAACATCATCGCTTCAATTGTCTTCAGCGTCAGATTTGAGTACAGCAACACTAAGTTACATCGCATGGTCGGACGGGCTTATGAAAACATGAAGTTGACTGGATCTCCTTCTGTTCAG
Seq C2 exon
ATCTACAACATGTTCCCTTGGCTTCGTCCCATTGTGGCGAATCGGAATCAAATTGTGAAGAATCTCAGAGATACCTTTAAACAAAATGAGGAATTAATAAATGGTGTAATGAAGACTTTGGACCCTTTTAACCCCAGAGGAATTGTTGACAGTTTCCTCATACGACAGCAGAAGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTCTGTCCACCCTAC
R:
CCTCTGGGGTTAAAAGGGTCC
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]