RnoEX6001791 @ rn6
Exon Skipping
Gene
ENSRNOG00000028891 | Cyp2t1
Description
cytochrome P450, family 2, subfamily t, polypeptide 1 [Source:RGD Symbol;Acc:620086]
Coordinates
chr1:83966741-83968214:+
Coord C1 exon
chr1:83966741-83966890
Coord A exon
chr1:83967137-83967297
Coord C2 exon
chr1:83968038-83968214
Length
161 bp
Sequences
Splice sites
3' ss Seq
AGAGCTGCTCTCACCCCCAGGAG
3' ss Score
7.89
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCATAGTGTTTTCTAATGGGCCGCGTTGGCGTACGCTTCGCAACTTTGCACTTGGAGCACTGAAGGAGTTTGGCGTGGGTACGAGTACCATTGAGGAGCGCATCCTGGAGGAGACCGCATGTGTGCTGGACGAATTTCAAGCCACCATGG
Seq A exon
GAGCTCCATTTGACCCTCGGCGGCTACTGGACAACGCTGTATCCAACGTCATTTGTACTGTGGTCTTCGGAAAGCGCTACAACTATGGAGACCCAGAGTTCCTGAGGCTCCTGGACCTCTTCAGTGACAATTTCCGTATCATGAGTTCCCGATGGGGTGAG
Seq C2 exon
ACATACAACATGTTCCCATCCTTCATGGACTGGATCCCTGGTCCCCACCACCGAATCTTCAAAAATTTCCAAGAGCTTCGGCTCTTCATCTCTGAGCAAATTCAGTGGCACCGGCAGTCACGACAGACTGGGGAGCCCCGTGACTTCATTGATTGTTTCCTCGAACAAATGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028891-'7-14,'7-7,8-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACTTGGAGCACTGAAGG
R:
ATCAATGAAGTCACGGGGCTC
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]