MmuEX6010180 @ mm9
Exon Skipping
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:50551567-50556635:-
Coord C1 exon
chr7:50556540-50556635
Coord A exon
chr7:50553377-50553509
Coord C2 exon
chr7:50551567-50551818
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCATCTTCTAATTCACACAGGGG
3' ss Score
5.48
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
Seq A exon
GGGAGAGACCTTATAAATGCAGCAGCTGTTGGAAAGCCTTTTGTACTAAGGTCCAACTCCAAGAACATGAGCGAATTCACACAGGAGAGAGACCTTATGTGTGCACTCATTGTGGGAAAGCCTTTAGAAGCAG
Seq C2 exon
CATGTGTGATAATATTGGAACCAACAATTCGGTCATATTTTTAAAAGCTATTTGTGTGTGAATGCTGGTATTGTGAGCCATGGAGTTAAGAAGACAACTTCCAGGAGTCCTTGCATACAGAATCTGTCTTTTCAGACACTGCATTTCATGGTCCAAGATAGTTGTGTGAGCGCTTCCAGAAGATACTCTCTCTTCTCCACCATCTATCCATCTTGACGTAGGAGTGCTTTAAATAAAGATGTGCACCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-'8-15,'8-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=57.8)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCAGGCCAGAGATGTCA
R:
AGCACTCCTACGTCAAGATGGA
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: