MmuEX6010180 @ mm10
Exon Skipping
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43296197-43300176:-
Coord C1 exon
chr7:43298581-43300176
Coord A exon
chr7:43298007-43298139
Coord C2 exon
chr7:43296197-43296448
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCATCTTCTAATTCACACAGGGG
3' ss Score
5.48
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCATCAACGGATTCACACAGGGGAGAAACCTTATGTGTGTTCTCAATGTGGAAAGGCCTTCAATCAGAAATCAATACTAGACCGGCATGAGAAGCTTCACCCTGGGGAGAAGCCTTACAAATGCAATGACTGTGGGAAGTCATTTAATTACCCATCCCAACTGAAGGTGCATTGCCATAGTCACACAGGGGAGAAGCCTTACAAGTGCCATGAGTGTGGGAAATCATTTAACTTTCCATGTGAACTAAAGGTGCATTATCAGAATCACACGGGAGAGAAGCCGTACAAATGCCGTGAATGTTGGAAACTGTTCAGTAAAATGTCCCAACTGAAGGCACATTATCGAGTTCACACAGGAGAAAGACCTTATAAGTGCAGCCACTGTGGGAAAGCCTTCTCTACTAAGGAACAAGTCCAAGAGCATGAGCGAATCCACACAGGAGAGAAACCCTTTGTGTGCACTGAATGTGGAAAAGCCTTCAGTAGCAGGTCATCTTTTC
Seq A exon
GGGAGAGACCTTATAAATGCAGCAGCTGTTGGAAAGCCTTTTGTACTAAGGTCCAACTCCAAGAACATGAGCGAATTCACACAGGAGAGAGACCTTATGTGTGCACTCATTGTGGGAAAGCCTTTAGAAGCAG
Seq C2 exon
CATGTGTGATAATATTGGAACCAACAATTCGGTCATATTTTTAAAAGCTATTTGTGTGTGAATGCTGGTATTGTGAGCCATGGAGTTAAGAAGACAACTTCCAGGAGTCCTTGCATACAGAATCTGTCTTTTCAGACACTGCATTTCATGGTCCAAGATAGTTGTGTGAGCGCTTCCAGAAGATACTCTCTCTTCTCCACCATCTATCCATCTTGACGTAGGAGTGCTTTAAATAAAGATGTGCACCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640_MULTIEX1-5/5=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
A:
PF134651=zf-H2C2_2=WD(100=57.8)
C2:
NO
Main Inclusion Isoform:
ENSMUST00000012796fB19996
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACAGGAGAGAAACCCT
R:
CTTCTGGAAGCGCTCACACAA
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types