MmuEX1028630 @ mm10
Exon Skipping
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43298007-43301265:-
Coord C1 exon
chr7:43301170-43301265
Coord A exon
chr7:43298581-43300176
Coord C2 exon
chr7:43298007-43298139
Length
1596 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTTTCTGTTTGTAGAAA
3' ss Score
9.24
5' ss Seq
TTCGTAAGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
Seq A exon
AAAAATCAGGAAATGATACCTTACCACAGAAAGCATCTGGGAAAACATCAGTTTATAGCAATGTGGCAAGTGAAGTGACAAGAGATGGTTCATGGTGTTCCCTTTTACAAGAACTATGGCAGGGTGCTGACATTACAAAGAGAGGTCAACAAAACCAGATTCTACTCTTCCCTCCTGGTTCTTTCCTCAAGAAAACTCTGAGCAAAAATAGTGATCATGAATATCAAAAGCCCAGGGAAACCATTCCTTTGGGACCCTACCTCATTTCAACACAAGAGGGTCTTCCACAATATCACTCACTTCCAAAAAGTTTGGATGTAAGCCTAGGAGCAAATGGTCATAATGAAAGAGATCAGCTCATTGACATTGTTGCATCCAGTCAACTCCTTATACCAGGCTCCTGTAATGCTAACTGTGTGGTTACTCATGGAGGAGAAGAATCATACAGAAGTACTGGGAATGGAGATGTTCTCAGCCATAAACAACCACTGATCTATGGAAACCGTTTTCAGGTGAAAGCAGATCAAAGTTCTCAGTGCCAGGAGGTACTCTATGCCATATCTTTGCATAAACCTGAGATCACTCTCACTGTGGACAGACCTATTGTTTCCTACAATGGTGGAAAGGCTTTCCTTTATGTGTCAGATTCACTGAGCCATCCATTCCAGCTGAAGGTGGACCGTGTAGTTCATACTGGAGGAGACCCTTACAAGTGTAGCAGCTGTGAGAAATCCTTTTGTAATGCAGCTGCACTCCAACAGCACGAGCAAATTCACACAGAAGAGAAACTGTATGTGTGTACTCTGTGTGGAAAAGCCTTCAGTGATGGGTCAGCTTTCTATGAACATGAATTGATTCACAAGAATCACACACCTTTTATCTGTGACATTTGTGGGAAGGCCTTCTTACGTAAATCAGAGTTGACATCCCATAAACAATGTCACAATGGAGAGAAGCCTTACAAATGCAATGACTGTGAGAAGTCATTTAAATTTCCATCCCAACTGAAGGTGCATCATCAGATTCATACGGGTGAGAAGCCTTATGAATGCCGTGAATGTGGGAAGTCATTCAGTAAAACAGCCAAACTCAAGGTGCATCAACGGATTCACACAGGGGAGAAACCTTATGTGTGTTCTCAATGTGGAAAGGCCTTCAATCAGAAATCAATACTAGACCGGCATGAGAAGCTTCACCCTGGGGAGAAGCCTTACAAATGCAATGACTGTGGGAAGTCATTTAATTACCCATCCCAACTGAAGGTGCATTGCCATAGTCACACAGGGGAGAAGCCTTACAAGTGCCATGAGTGTGGGAAATCATTTAACTTTCCATGTGAACTAAAGGTGCATTATCAGAATCACACGGGAGAGAAGCCGTACAAATGCCGTGAATGTTGGAAACTGTTCAGTAAAATGTCCCAACTGAAGGCACATTATCGAGTTCACACAGGAGAAAGACCTTATAAGTGCAGCCACTGTGGGAAAGCCTTCTCTACTAAGGAACAAGTCCAAGAGCATGAGCGAATCCACACAGGAGAGAAACCCTTTGTGTGCACTGAATGTGGAAAAGCCTTCAGTAGCAGGTCATCTTTTC
Seq C2 exon
GGGAGAGACCTTATAAATGCAGCAGCTGTTGGAAAGCCTTTTGTACTAAGGTCCAACTCCAAGAACATGAGCGAATTCACACAGGAGAGAGACCTTATGTGTGCACTCATTGTGGGAAAGCCTTTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640_MULTIEX1-4/5=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
C2:
PF134651=zf-H2C2_2=WD(100=57.8)
Main Inclusion Isoform:
ENSMUST00000012796fB19996
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATTCCATTCCCAGTCCTG
R:
TGCTTCTAAAGGCTTTCCCACA
Band lengths:
228-1824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types