MmuEX0053580 @ mm10
Exon Skipping
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43296523-43301737:-
Coord C1 exon
chr7:43301611-43301737
Coord A exon
chr7:43301170-43301265
Coord C2 exon
chr7:43296523-43300176
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATATCCTTTTGATTAACAGGGT
3' ss Score
7.28
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATGGATGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCATCTGGACTCCGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq A exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
Seq C2 exon
AAAAATCAGGAAATGATACCTTACCACAGAAAGCATCTGGGAAAACATCAGTTTATAGCAATGTGGCAAGTGAAGTGACAAGAGATGGTTCATGGTGTTCCCTTTTACAAGAACTATGGCAGGGTGCTGACATTACAAAGAGAGGTCAACAAAACCAGATTCTACTCTTCCCTCCTGGTTCTTTCCTCAAGAAAACTCTGAGCAAAAATAGTGATCATGAATATCAAAAGCCCAGGGAAACCATTCCTTTGGGACCCTACCTCATTTCAACACAAGAGGGTCTTCCACAATATCACTCACTTCCAAAAAGTTTGGATGTAAGCCTAGGAGCAAATGGTCATAATGAAAGAGATCAGCTCATTGACATTGTTGCATCCAGTCAACTCCTTATACCAGGCTCCTGTAATGCTAACTGTGTGGTTACTCATGGAGGAGAAGAATCATACAGAAGTACTGGGAATGGAGATGTTCTCAGCCATAAACAACCACTGATCTATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640_MULTIEX1-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.388 C2=0.079
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTGATGCTGGAGATCT
R:
GTCAGCACCCTGCCATAGTTC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types