BtaEX6083922 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000040603 | ZNF175

Description

zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]

Coordinates

chr18:57904190-57910762:+

Coord C1 exon

chr18:57904190-57904316

Coord A exon

chr18:57904707-57904802

Coord C2 exon

chr18:57908949-57910762

Length

96 bp

Sequences

Splice sites

3' ss Seq

ATATCCTTTCTTATTCACAGGGT

3' ss Score

9.12

5' ss Seq

ATGGTGAGT

5' ss Score

10.13

Exon sequences

Seq C1 exon

GGGTTAGTGTCTTTTGAGGATGTGACCATGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGACACCTGTATCAGGATGTGATGCTGGAGATCTACAGCCACTTTTTCTCTGTGG

Seq A exon

GGTATCACATTCCCAACCCAGAGATCATTTTCAGGATTGAAGAAGGAAAGGAACCATGGGTGAGGAAGACTGAACTCCCATGTCAGAGGTATCATG

Seq C2 exon

AAGGGGAGTTTGGGCTTGAAACCCCACAACGGGAAATTTCTGAAGAAGCTTCATTTCACAATGAGATGATGGGTGGAGTCACAAGAGATGGTTCATGGTGTTCCATTTTAGAAGAACTGTGGAAACAAGCTGACCAAACAGAGAGGGATCCTAAAAATCAAAATAAACCTTCACATCAGGGGGCTTTCTTCAATAAGAAAACACTGAACACAGAGAGGGACTGTGACTACAAGTACCCTGGAACAGTCATTCAGGCAAAGCCCCACCTTGTTTCTTCACAAAAGGGACCTCATAAACGTTGCTCAGTTGCAAAAAGGTTGAAGCCTAACCTAGAAGCAACTCATCAAAATCAAAGCAGTATCACAAAACACCTTGATGATATGGTTGGATCTGGTCAGCCAGTTATCCATAGCTCTTCCAGTGCCAGCTGCAAGAATACTCACACAGGAGAGAACTTCCATGAAGGTAATACATGTACAAAAGCCTTCAGCCAGAAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000040603-'5-7,'5-3,8-7=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.023 A=0.110 C2=0.248

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)

Main Inclusion Isoform:

ENSBTAP00000048684