HsaEX6096488 @ hg38

Exon Skipping

Gene

ENSG00000105497 | ZNF175

Description

zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]

Coordinates

chr19:51581391-51592508:+

Coord C1 exon

chr19:51581391-51581517

Coord A exon

chr19:51581787-51581882

Coord C2 exon

chr19:51586627-51592508

Length

96 bp

Sequences

Splice sites

3' ss Seq

GTATCCTTTCTAATTAACAGGGT

3' ss Score

7.38

5' ss Seq

AAGGTGAGT

5' ss Score

10.47

Exon sequences

Seq C1 exon

GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG

Seq A exon

GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG

Seq C2 exon

AAAGGGAGTTTGGGCTTGAAATCCCACAAAAGGAGATTTCTAAGAAAGCTTCATTTCAAAAGGATATGGTAGGTGAGTTCACAAGAGATGGTTCATGGTGTTCCATTTTAGAAGAACTGAGGCTGGATGCTGACCGCACAAAGAAAGATGAGCAAAATCAAATTCAACCCATGAGTCACAGTGCTTTCTTCAACAAGAAAACATTGAACACAGAAAGCAATTGTGAATATAAGGACCCTGGGAAAATGATTCGCACGAGGCCCCACCTTGCTTCTTCACAGAAACAACCTCAGAAATGTTGCTTATTTACAGAAAGTTTGAAGCTGAACCTAGAAGTGAACGGTCAGAATGAAAGCAATGACACAGAACAGCTTGATGACGTTGTTGGGTCTGGTCAGCTATTCAGCCATAGCTCTTCTGATGCCTGCAGCAAGAATATTCATACAGGAGAGACATTTTGCAAAGGTAACCAGTGTAGAAAAGTCTGTGGCCATAAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000105497-'5-11,'5-8,8-11=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.023 A=0.206 C2=0.125

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)

Main Inclusion Isoform:

ENSP00000262259