RnoEX0048224 @ rn6
Exon Skipping
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99488667-99496209:+
Coord C1 exon
chr1:99488667-99488793
Coord A exon
chr1:99489149-99489250
Coord C2 exon
chr1:99493847-99496209
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGATATTCTTCCAACTACAGGCT
3' ss Score
5.16
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTTAGCCAGGAGGAGTGGCGGCGCCTGGACCCTGCCCAGAGACGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
Seq A exon
GCTACCCTATTCCCAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGAAGACACAGACAGGAGAGGCTAAGTTCCCACATCATCAGTGTTGGTGTCAAG
Seq C2 exon
AAGTGGAATCAGAGTTTTACACTCCCCGACAGAAAGCTTCCGAGAATGCAGCATTTCAAACCAGAAAGGCGAGTGCACTCTCAGGTCATGGTTTGTGGTGCTCTATTTTAGAAGTACTGTGGCAAGACCCCGACCTTACAAAAAGAGATGGACAAAGCCAGATCCCACCCTGGAGTCCTGGTGCTTTCCTCAACAAGAAAACACAGAACACAGACAGAGACTGTGGTTGTAAAGAGCCCGGAAAAACCACCCCCTTGGTATCTAACCTTATTTCTACACAAAAGGGAGCTCCAAAGTCACTTGCGAAACATTTGAAGCGCAACCTTGAAGCAAATGGTGAAGAACAAGGCAACGTCACAAAGCAGCTTAATGACATTGTTACGTTGGGTCGACTCTGCACGCAAGACACTAACTGTACAGTTCCTCACGAAGGGCCGTGCGAAGGTGACCAGTGCAGAAAAGTTCCCATCCACAAACAACCACTTGCAGAGAAAGAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233-'8-7,'8-3,9-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.9),PF0009621=zf-C2H2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.3),PF097235=Zn-ribbon_8=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF0184418=HNH=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF0009621=zf-C2H2=WD(100=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACTTTAGCCAGGAGGA
R:
TTTGTAAGGTCGGGGTCTTGC
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]