BtaEX6006748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002113 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:91031761-91044294:-
Coord C1 exon
chrX:91044174-91044294
Coord A exon
chrX:91043813-91043908
Coord C2 exon
chrX:91031761-91033793
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTATCATGTCCTGTTCACAGGTT
3' ss Score
9.29
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGTCATTCGAGGATGTCACCGTGGACTTCAGCCAGGAGGAGTGGCAGCACTTGGACCCTGTTCAGCAGCGCCTGTATTGGGATGTGACACTGGAGACCTACAGCCACCTGTGCGCAGTGG
Seq A exon
GTTACCAAGTTCCCAAACCAGAGGTCATCTTCAGACTGGAGCAAGGAGAGGGGTCATGGACATTGGACAAAGAAACTCCACATCACAGCTGCTCAG
Seq C2 exon
ATGAGGATATTGGGCAAACTCAACAACAGAGAATTTCTGGAGAAGTTTCATTCCACTGTGAGAAAATTGGTCAATCCATAGGAAAAGATTCATTGTGTTCCATTATAGAAGAACTGTGGCAAGGTAATGACCAGCTAGAAAGAAATCAAGAAAACCGAAATAACCCTTTAAGTCATGTGAAAGTATTGACTAAGGAGAGGGGCTATGAATATAAAAATATTGAAAAAATAATTCATGTGAGTACCAGGCTTGTTCCTTCAATTAAAAGACTCCATAACTTTGATACATTTGGAAAAAGTTTGAAGCATACTTTAAATTTACATAATCACAATAAAAGCAATGCAACAAAGAACTTTGATAAGATTTTTGGAAATGGTAACAATTTTGCACATAGCTCTTCCTTTACTAAGAATGAGAATGCTAATATAGGAACAAACTCCTATGAACTTAATCAATGTGAAAAACATCTTGACCACAAACAAGTTCTCGCCCACCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002113-'3-4,'3-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.109
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF097235=Zn-ribbon_8=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGAGACCTACAGCCA
R:
GCTGGTCATTACCTTGCCACA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]