RnoEX0000183 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:98625744-98643895:+
Coord C1 exon
chr1:98625744-98625870
Coord A exon
chr1:98626305-98626400
Coord C2 exon
chr1:98627439-98643895
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTTGATTAACAGGGT
3' ss Score
6.9
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGTGGATGTCTTTTGAGGATGTGACTGTGAACTTCAGCCAGGAGGAGTGGCAACAGTTGGATTCTGCTCAGAGACTCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
Seq A exon
GGTACTCCATTCCCAGCCCCGGAGTCATCTTTAGGCTGGAAAAGGGAAAGGAGGCCCAGGCAGGAAAGGCTGAATTCCCAGGCCAGGGATGTCAAG
Seq C2 exon
AAAAATCAGGAACTGGTACCTCGCCACAGAAAGTGTCTGAGAAAGCTTCCGTTCATAGCAATATGGCAAGTGAAGTCACAAGAGATGGCTCATGGTGTTCCCTTTTACAAGAACTATGGCAGGGTGCTGACATTACAAAGAAAGGTCAACAAAACCAGATTCTACCTTTCCCTCCTGTTTCTTTCCTCAAGAAAACTCTGAGCAAAAATAGTGGTCATGACTATCAAAAGCCTGGGGAAACCATCCCTTTGAGATCCTACCTTATTTCAACACAAGAGGGTCTTCCACAATATTGCTCACTTCCAAAAAGTTTGGACCTAAACCTAGGAGCAAATGGTCCGAATGAAAGGGATCGGCTCATTGACATTGTTGCATCAAGTCAGCTTCTTATGCCAGGCTCTTGTAATGCTGACCGTGTGGTTCCTCATGGAGGAGAGTCATACAGAAGTACTGGGAATGGAGACGTTCTCAGCCACAAACAACCACTGATCTATGGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
Rn.149551_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGTTGGATTCTGCT
R:
AGGGAACACCATGAGCCATCT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]