Special

MmuEX0053580 @ mm9

Exon Skipping

Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:50551893-50557107:-
Coord C1 exon
chr7:50556981-50557107
Coord A exon
chr7:50556540-50556635
Coord C2 exon
chr7:50551893-50555546
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATATCCTTTTGATTAACAGGGT
3' ss Score
7.28
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGATGGATGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCATCTGGACTCCGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq A exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
Seq C2 exon
AAAAATCAGGAAATGATACCTTACCACAGAAAGCATCTGGGAAAACATCAGTTTATAGCAATGTGGCAAGTGAAGTGACAAGAGATGGTTCATGGTGTTCCCTTTTACAAGAACTATGGCAGGGTGCTGACATTACAAAGAGAGGTCAACAAAACCAGATTCTACTCTTCCCTCCTGGTTCTTTCCTCAAGAAAACTCTGAGCAAAAATAGTGATCATGAATATCAAAAGCCCAGGGAAACCATTCCTTTGGGACCCTACCTCATTTCAACACAAGAGGGTCTTCCACAATATCACTCACTTCCAAAAAGTTTGGATGTAAGCCTAGGAGCAAATGGTCATAATGAAAGAGATCAGCTCATTGACATTGTTGCATCCAGTCAACTCCTTATACCAGGCTCCTGTAATGCTAACTGTGTGGTTACTCATGGAGGAGAAGAATCATACAGAAGTACTGGGAATGGAGATGTTCTCAGCCATAAACAACCACTGATCTATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-'5-11,'5-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.014 A=0.351 C2=0.078
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=WD(100=100.0)

							
A:
PF0135222=KRAB=PD(0.1=0.0)

							
C2:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040282





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000012796, ENSMUSP00000083175, ENSMUSP00000103620, ENSMUSP00000114600, ENSMUSP00000126156, ENSMUSP00000129988
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr19:51581787-51581882 
HIGH PSI
HsaEX6096488
(ZNF175)
Human
(hg19)
chr19:52085040-52085135 
HIGH PSI
HsaEX6096488
(ZNF175)
Rat
(rn6)
chr1:99489149-99489250 
HIGH PSI
RnoEX0048224
(LOC102546648)
Cow
(bosTau6)
chr18:57904707-57904802 
HIGH PSI
BtaEX6083922
(ZNF175)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGAGGTGATGCTGGAGATCT

				
R: 
GTCAGCACCCTGCCATAGTTC

				
Band lengths: 
173-269

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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