MmuEX6012390 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98092407-98094395:-
Coord C1 exon
chr7:98094276-98094395
Coord A exon
chr7:98093478-98093620
Coord C2 exon
chr7:98092407-98092617
Length
143 bp
Sequences
Splice sites
3' ss Seq
GGCTGATGGGTGCCTTTCAGGGC
3' ss Score
5.92
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTGAACCCCCCAGACCTGATGAGCTGCCTCACCAGCCGCACCCTCATCACCCGTGGGGAGACGGTGTCCACCCCTCTCAGCAGGGAACAGGCGCTGGATGTGCGAGATGCCTTTGTCAAG
Seq A exon
GGCATCTATGGGCGGCTCTTTGTGTGGATTGTGGAGAAGATCAACGCAGCAATCTACAAGCCACCCCCCCTGGAAGTGAAGAACTCTCGCCGGTCCATCGGTCTCCTGGACATCTTTGGATTTGAGAACTTCACTGTGAACAG
Seq C2 exon
CTTCGAGCAGCTCTGCATTAACTTTGCCAATGAGCACCTGCAGCAATTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTACGACCTGGAGAGCATCGACTGGTTGCACATTGAGTTCACTGACAACCAGGAAGCACTGGACATGATTGCCAACCGGCCTATGAACGTCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'31-27,'31-25,32-27=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.9=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCTGATGAGCTGCCTC
R:
CCAGTGCTTCCTGGTTGTCAG
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types