BtaEX6060085 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57351083-57353261:+
Coord C1 exon
chr15:57351083-57351202
Coord A exon
chr15:57351944-57352086
Coord C2 exon
chr15:57353051-57353261
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCAGCTGCCTCTCCCTTCAGGGC
3' ss Score
9.99
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGAACCCCCGAGACCTGATGAACTGCCTGACCAGCCGCACCCTCATCACTCGAGGGGAGACAGTGTCCACTCCGCTCAGCAGGGAGCAGGCGCTGGACGTGCGAGATGCCTTTGTCAAG
Seq A exon
GGCATCTATGGGCGGCTCTTCGTGTGGATCGTGGACAAGATCAATGCAGCCATTTATAAGCCCCCTTCCCAGGAAGTGAAGAACTCTCGCCGGTCCATTGGTCTCCTGGACATTTTTGGGTTCGAGAACTTTGCAGTGAACAG
Seq C2 exon
CTTTGAGCAGCTCTGCATCAACTTTGCCAATGAGCACCTGCAGCAGTTCTTCGTGCGGCACGTGTTCAAGCTGGAGCAGGAGGAGTATGACCTGGAGAGCATTGACTGGCTGCACATTGAGTTCACAGACAACCAGGATGCCCTGGACATGATCGCCAACAAACCCATGAACATCATCTCCCTCATCGATGAGGAGAGCAAGTTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.9=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTCGAGGGGAGACAGTG
R:
TGTTCATGGGTTTGTTGGCGA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]