DreEX6063716 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3125102-3127191:+
Coord C1 exon
chr18:3125102-3125221
Coord A exon
chr18:3125306-3125448
Coord C2 exon
chr18:3126981-3127191
Length
143 bp
Sequences
Splice sites
3' ss Seq
CAGCGGTTTGTGTTACACAGGGC
3' ss Score
5.72
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGGACTTGAAGGATCTGATGAACTGTTTGACCAGCCGAACTATAATAACCCGTGGAGAGACGGTGTCTACTCCGCTCAGCATTGAACAGGCATTGGACGTGAGAGACGCTTTTGTTAAG
Seq A exon
GGCATTTATGGCCGTTTGTTTGTGTGGATTGTTGAGAAAATCAACGCAGCCATTTATAAACCTCCATCTCTGGAGCTGAAAGCAGTGCGAAGATCCATCGGCCTATTAGATATCTTCGGCTTCGAGAACTTCATGGTTAACAG
Seq C2 exon
CTTTGAGCAGCTGTGCATTAACTTTGCCAATGAAAACCTGCAGCAGTTTTTCGTCCGTCATGTGTTCAAGCTGGAGCAGGAGGAATATAACCTGGAGAACATCAACTGGCAGCACATCGAGTTCACAGACAACCAGGACGCTTTAGACATGATCGCCATAAAGCCCATGAACATCATCTCGCTCATCGACGAGGAGAGCAAGTTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.9=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCGCTCAGCATTGAACAG
R:
GGAAACTTGCTCTCCTCGTCG
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]