MmuEX6012986 @ mm10
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107792117-107794105:-
Coord C1 exon
chr7:107793954-107794105
Coord A exon
chr7:107793234-107793423
Coord C2 exon
chr7:107792117-107792140
Length
190 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCTTTTTTCCACAGGGA
3' ss Score
12.94
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTGGCAGGCTCCCACAAGTCTTGCAGCAGGTAAACCTGCCAATTTTGACTCAGGAGGAATGTGAGGCCGTTCTGTTGACCTTAAAGAATCCCATTACTGGGAAGACCTTTCTCTGCACAGGATCCCCTGATGGAGGGAGAGATGCTTGTCAG
Seq A exon
GGAGATTCAGGAGGGTCACTTATGTGCCAGAATAGGAAAGGGGCCTGGACTCTGGCTGGAGTGACTTCTTGGGGTTTGGGCTGTGGTCGAAGCTGGAGAAACAATGCAAGAAAGAAAGAGCAAGGATCTCCTGGAATCTTCACAGATCTTAGGAGAGTGCTTCCCTGGATCCTCAAACATATCCAGACTG
Seq C2 exon
GCCATCGAAGGAAGAGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(23.0=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCCCACAAGTCTTGC
R:
TTGGTGCTCTTCCTTCGATGG
Band lengths:
170-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types