DreEX6101648 @ danRer10
Exon Skipping
Gene
ENSDARG00000094793 | ovch2
Description
ovochymase 2 [Source:ZFIN;Acc:ZDB-GENE-061207-75]
Coordinates
chr25:15978384-15979083:-
Coord C1 exon
chr25:15978932-15979083
Coord A exon
chr25:15978643-15978838
Coord C2 exon
chr25:15978384-15978486
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCCTCTACTTCAGGGG
3' ss Score
10.16
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAGGGTCGCTTTCTTCGGTTCTGCAGGAGGTGCATCTGGATCTGTTGGACCAAAGCAAATGTAAACACGTCATAAAAACTCTTAAACCAGGGCAGAAGACCTTCACAGTTATGTGTGCTGGCCCAGAAAGAGGAGGGAGAGATGCCTGTCAA
Seq A exon
GGGGATTCTGGGGGTCCTCTTCTCTGCCCCAGAGCAGATGGACGGTGGGTAGCTGTGGGGGTCACATCATGGGGTAAGGGCTGCGGTCGAAGTTGGAATAATAACAAGTTCAAACCCGGATCCAGAAGAGGCTCACCTGGAGTATTCACTGATGTCTTAATGTTCCTGTCATGGATCAAGTCAAATCTTAGAAAAG
Seq C2 exon
GTTTGGACAGGTCTCTGTGCAGCGTACCTGATGGAGTGGTTGTTGGAAATGAAGGTGTCATCAGAAATCCAGTTCTTCCAGGACAAAGTTACAATAACAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094793-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.0=100)
A:
PF0008921=Trypsin=PD(23.2=87.9)
C2:
PF0043115=CUB=PU(25.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGTCGCTTTCTTCGGTTC
R:
AACTTTGTCCTGGAAGAACTGGA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]