RnoEX6004219 @ rn6
Exon Skipping
Gene
ENSRNOG00000019794 | Ovch2
Description
ovochymase 2 [Source:RGD Symbol;Acc:1564636]
Coordinates
chr1:172020655-172022719:-
Coord C1 exon
chr1:172022568-172022719
Coord A exon
chr1:172021874-172022063
Coord C2 exon
chr1:172020655-172020678
Length
190 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCTTCTTTCCCCAGGGA
3' ss Score
12.52
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTGGCAGCCTCCCACAAGTCTTGCAGCAGGTGAACCTGCCAATTTTGACTCACGAGGAATGTGAGGCTGTTATGTTGACCTTAAGGAACCCCATTACTGGGAAGACCTTTCTCTGCACAGGATCCCCTGATGGAGGGAGAGACGCATGTCAG
Seq A exon
GGAGATTCAGGAGGGTCGCTTATGTGTCAGAATAGGAAAGGGGCCTGGACTCTAGCTGGAGTGACTTCTTGGGGTCTGGGCTGTGGTCGAAGCTGGAGAAACAATGCAAGGAAGAAAGAACAAGGATCTCCTGGGATCTTCACAGATCTTAGGAGAGTGCTTCCCTGGATCCATGAACACGTCCAGACTG
Seq C2 exon
GCCATCGAAGAAAGAGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019794-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(23.0=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTCCCACAAGTCTTG
R:
TGGTGCTCTTTCTTCGATGGC
Band lengths:
170-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]