MmuEX6012988 @ mm10
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107790079-107792140:-
Coord C1 exon
chr7:107792117-107792140
Coord A exon
chr7:107790323-107790413
Coord C2 exon
chr7:107790079-107790203
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGCATTTCCTCTCAGCTT
3' ss Score
5.25
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCCATCGAAGGAAGAGCACCAAAG
Seq A exon
CTTTATGCAGTGAGCCTGATGGTCTCATCAGTGGGTCTGAGGGAGAGCTGCACTTCCCAGAAAGCCTCCACCTGTACTATGAGAGCAAGCA
Seq C2 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(25.9=90.3)
C2:
PF0043115=CUB=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGAAGGAAGAGCACCAA
R:
CAACGAGTCTGTCTTCTAAAGAGT
Band lengths:
148-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types