DreEX6101649 @ danRer10
Exon Skipping
Gene
ENSDARG00000094793 | ovch2
Description
ovochymase 2 [Source:ZFIN;Acc:ZDB-GENE-061207-75]
Coordinates
chr25:15978167-15978838:-
Coord C1 exon
chr25:15978643-15978838
Coord A exon
chr25:15978384-15978486
Coord C2 exon
chr25:15978167-15978300
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCAAACTCAATGTACTATAGGTT
3' ss Score
4.87
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GGGGATTCTGGGGGTCCTCTTCTCTGCCCCAGAGCAGATGGACGGTGGGTAGCTGTGGGGGTCACATCATGGGGTAAGGGCTGCGGTCGAAGTTGGAATAATAACAAGTTCAAACCCGGATCCAGAAGAGGCTCACCTGGAGTATTCACTGATGTCTTAATGTTCCTGTCATGGATCAAGTCAAATCTTAGAAAAG
Seq A exon
GTTTGGACAGGTCTCTGTGCAGCGTACCTGATGGAGTGGTTGTTGGAAATGAAGGTGTCATCAGAAATCCAGTTCTTCCAGGACAAAGTTACAATAACAATGA
Seq C2 exon
AATGTGTTTGTGGTTCATTCAAGTCACCACTGGTCAGCAAATTCTACTGAAGTTCATTGAGATTGACCTGGAGAATGACACCCAATGCCAAAACGACCAACTGACTGTGTATGTGGATGAAAGTAGGCAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094793-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(23.2=87.9)
A:
PF0043115=CUB=PU(25.0=80.0)
C2:
PF0043115=CUB=FE(40.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATCATGGGGTAAGGGC
R:
AGTCAGTTGGTCGTTTTGGCA
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]