RnoEX6004220 @ rn6
Exon Skipping
Gene
ENSRNOG00000019794 | Ovch2
Description
ovochymase 2 [Source:RGD Symbol;Acc:1564636]
Coordinates
chr1:172018850-172020678:-
Coord C1 exon
chr1:172020655-172020678
Coord A exon
chr1:172019094-172019184
Coord C2 exon
chr1:172018850-172018974
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGCATTCCCTCTCAGCCT
3' ss Score
4.75
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCCATCGAAGAAAGAGCACCAAAG
Seq A exon
CCTCATGCAGTGAGCTTGATGGTCTAATCAGTGGATCTGAGGGAGAGTTGCACTTCCCAGAAAGCCTCCACCTATACTATGAAAGCAAGCA
Seq C2 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGTTCAATTTGTCACACTTGGATGTAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019794-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(24.5=83.9)
C2:
PF0043115=CUB=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGAAGAAAGAGCACCA
R:
CAACGAGTCTGTCTTCTAAAGAGT
Band lengths:
149-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]