MmuEX6013066 @ mm9
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116975181-116980630:-
Coord C1 exon
chr7:116980508-116980630
Coord A exon
chr7:116976523-116976639
Coord C2 exon
chr7:116975181-116975303
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTTGATAATTACAGATG
3' ss Score
7.2
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATATCGATGAGTGCCAGACCCGGAATGGAGGTTGTAACCATTTCTGCAAAAACACCGTGGGCAGTTTTGACTGCAGTTGCAAAAAAGGATTTAAATTACTAACAGACGAGAAGTCTTGCCAAG
Seq A exon
ATGTGGATGAATGTTCGTTGGAAAGGACCTGTGACCACAGTTGCATCAACCACCCTGGCACATTTATTTGTGCCTGCAACCCAGGGTACACTCTCTATAGCTTCACCCACTGTGGAG
Seq C2 exon
ACACCAACGAGTGCAGTGTCAACAATGGAGGCTGCCAGCAAGTGTGCATCAACACAGTGGGTAGCTACGAATGTCAGTGTCACCCAGGGTTCAAACTCCACTGGAATAAAAAAGACTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGATGAGTGCCAGACCCG
R:
TTTTTATTCCAGTGGAGTTTGAACCC
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: