RnoEX6004267 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174461909-174468535:-
Coord C1 exon
chr1:174468413-174468535
Coord A exon
chr1:174464406-174464522
Coord C2 exon
chr1:174461909-174462031
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGATAATTACAGATG
3' ss Score
7.44
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATATCGATGAGTGCCAGACCCGGAATGGAGGTTGTAATCATTTCTGCAAAAACACTGTGGGCAGTTTTGACTGCAGCTGCAGAAAAGGATTTAAATTACTAACAGACGAGAAGTCTTGCCAAG
Seq A exon
ATGTGGATGAATGTTCTTTGGAAAGGACCTGTGACCACAGCTGCATCAACCACCCTGGTACATTTACGTGTGCCTGCAATAGAGGATACACTCTCTATAGCTTCACCCACTGTGGAG
Seq C2 exon
ACACCAACGAGTGCAGCGTCAACAACGGAGGCTGCCAGCAAGTTTGCGTCAACACAGTGGGTGGCTATGAGTGCCAGTGTCATCCAGGGTACAAGCTCCACTGGAATAAAAAAGACTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.0)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGATGAGTGCCAGACCC
R:
TTTTATTCCAGTGGAGCTTGTACCC
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]