MmuEX6013578 @ mm9
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126719124-126723949:+
Coord C1 exon
chr7:126719124-126719270
Coord A exon
chr7:126721596-126721749
Coord C2 exon
chr7:126723870-126723949
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTGTGTTTTCAACAGCTG
3' ss Score
10.87
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGAGGCATCCACCATTCATCAGTGTGTGGAGACAGAAAGCCGAGAATCAGCAGCCATCTACTTCACTAGTGGGACCAGTGGCCCTCCCAAGATGGCAGAACACTCCCACTGCAGCCTGGGCATCAAGGCCAAGATGGATGCTGCCAG
Seq A exon
CTGGACAGGCCTGAGTACTTCTGACATAATATGGACCATCTCAGACACGGCTTGGATAATGAACATTTTAGGAGCGTTTCTGGAACCTTGGGTATTGGGAGCATGCATATTTGTCCATCTTTTGCCAAAGTTTGATTCACAAACTGTTCTAAAG
Seq C2 exon
GTGCTTTCCAGCTATCCCATCAATACCCTGGTGGGTGCCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'6-10,'6-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100),PF148561=Hce2=FE(65.3=100)
A:
PF0050123=AMP-binding=FE(12.3=100),PF148561=Hce2=PD(28.0=40.4)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCATCCACCATTCATCAGT
R:
CTGGAAAGATCCTGTTGTAGCA
Band lengths:
226-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: